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Analysis Biomolecular Interactions of IgG with Z33 Analog by BLI (CAT#: STEM-MB-0182-CJ)

Introduction

EETI-II is a three-disulfide cysteine knot, while Z33 is composed of two antiparallel 3.613-helices bridged by a short loop. These two proteins were selected for several reasons. First, both EETI-II and Z33 are highly representative of small protein scaffolds that are of interest in developing novel protein functionality. EETI-II-like cysteine knots have high thermal and proteolytic stability, tolerance to mutation, oral bioavailability, and low immunogenicity, making them attractive targets for therapeutic protein engineering. Minimal helical scaffolds such as Z33 have also been extensively used to engineer novel biological functions. Since α-helix interfaces are commonplace in protein-protein binding interactions, such scaffolds are routinely evolved to bind proteins, and thus to elicit biologically relevant functions.




Principle

Bio-Layer Interferometry (BLI) is an optical technique for measuring macromolecular interactions by analyzing interference patterns of white light reflected from the surface of a biosensor tip. BLI experiments are used to determine the kinetics and affinity of molecular interactions. In a BLI experiment, one molecule is immobilized to a Dip and Read Biosensor and binding to a second molecule is measured. A change in the number of molecules bound to the end of the biosensor tip causes a shift in the interference pattern that is measured in real-time.

Applications

Pharmacology

Procedure

1. Detect Buffers and prepare samples. BLI experiments are set up with one molecule immobilised on the surface of the biosensor (load sample) and a second molecule in solution (the analytical sample).
2. Fix the load sample on the biocompatible biosensor while the analytical sample is in solution.
3. The biosensor tip is immersed in the solution so that the target molecule begins to bind to the analysis sample.
4. Set up and run the BLI experiment. Molecules bound to or dissociated from the biosensor can generate response curves on the BLI system; unbound molecules, changes in the refractive index of the surrounding medium or changes in flow rate do not affect the interferogram pattern.
5. Collect and analyse data on the BLI's system.

Materials

• Equipment: Fortebio Bio-Layer Interferometry (BLI)
• Sample Type: DNA, RNA, Protein, Antibodies, Peptides, Small Molecules