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Analysis Biomolecular Interactions of P RNA and P protein with Individual Compounds by BLI (CAT#: STEM-MB-0138-CJ)

Introduction

The composition of RNase P varies across the three domains of life and therefore may afford high selectivity in drug targeting. While in archaea and eukaryotes, RNase P is comprised of one RNA subunit and four to ten proteins, in bacteria, this complex is formed by an RNA subunit (P RNA, 350–400 nucleotides, 110–125 kDa) and a single protein (P protein, ∼110 amino acids, 13 kDa). In all species, the P RNA can serve as the primary biocatalyst for the cleavage of the 5′-leader sequence of pre-tRNAs during tRNA maturation. The P protein, on the other hand, can bind the distal 5′-leader region of the pre-tRNA substrate, enhances the affinity of metal ions, and assists in product release. And RNase P is dependent on divalent metal ions (Mg2+ is needed for proper folding and activity and in vitro, high concentrations of Mg2+ are sufficient to allow P RNA catalysis, even in the absence of the protein subunit.




Principle

Bio-Layer Interferometry (BLI) is an optical technique for measuring macromolecular interactions by analyzing interference patterns of white light reflected from the surface of a biosensor tip. BLI experiments are used to determine the kinetics and affinity of molecular interactions. In a BLI experiment, one molecule is immobilized to a Dip and Read Biosensor and binding to a second molecule is measured. A change in the number of molecules bound to the end of the biosensor tip causes a shift in the interference pattern that is measured in real-time.

Applications

Pharmacology

Procedure

1. Detect Buffers and prepare samples. BLI experiments are set up with one molecule immobilised on the surface of the biosensor (load sample) and a second molecule in solution (the analytical sample).
2. Fix the load sample on the biocompatible biosensor while the analytical sample is in solution.
3. The biosensor tip is immersed in the solution so that the target molecule begins to bind to the analysis sample.
4. Set up and run the BLI experiment. Molecules bound to or dissociated from the biosensor can generate response curves on the BLI system; unbound molecules, changes in the refractive index of the surrounding medium or changes in flow rate do not affect the interferogram pattern.
5. Collect and analyse data on the BLI's system.

Materials

• Equipment: Fortebio Bio-Layer Interferometry (BLI)
• Sample Type: DNA, RNA, Protein, Antibodies, Peptides, Small Molecules