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Analysis Biomolecular Interactions of Single‐Domain Antibodies (VHHs) with PN‐1 by BLI (CAT#: STEM-MB-0111-CJ)

Introduction

Protease nexin‐1 (PN‐1) belongs to a family of structurally related proteins known as inhibitors of serine protease or serpins, which can be found in most organisms. Serpins use their reactive center loops (RCL) to target the active site of serine proteases, driving the complex into a suicide substrate inhibition mechanism. This leads to inactivation of the protease and often rapid clearance via scavenger receptors.

Phylogenetically, PN‐1 is most closely related to plasminogen activator inhibitor 1 (PAI‐1) with 41% shared sequence. PN‐1 is undetectable in the circulating blood, but is present in circulating cells (monocytes and platelets) and vascular cells. PN‐1 is secreted during platelet activation and efficiently inhibits thrombin, the key enzyme of the coagulation cascade which catalyzes fibrin formation. Besides thrombin, PN‐1 inhibits several other serine proteases, albeit much less efficiently, such as trypsin, tissue‐type plasminogen activator, urokinase‐type plasminogen activator (u‐PA), plasmin, factor Xa, factor XIa, activated protein C, and factor VII activating protease. Its physiological role extends to several processes, like coagulation, fibrinolysis and tissue remodelling.




Principle

Bio-Layer Interferometry (BLI) is an optical technique for measuring macromolecular interactions by analyzing interference patterns of white light reflected from the surface of a biosensor tip. BLI experiments are used to determine the kinetics and affinity of molecular interactions. In a BLI experiment, one molecule is immobilized to a Dip and Read Biosensor and binding to a second molecule is measured. A change in the number of molecules bound to the end of the biosensor tip causes a shift in the interference pattern that is measured in real-time.

Applications

Phylogenetically; Immunology/Inflammation;

Procedure

1. Detect Buffers and prepare samples. BLI experiments are set up with one molecule immobilised on the surface of the biosensor (load sample) and a second molecule in solution (the analytical sample).
2. Fix the load sample on the biocompatible biosensor while the analytical sample is in solution.
3. The biosensor tip is immersed in the solution so that the target molecule begins to bind to the analysis sample.
4. Set up and run the BLI experiment. Molecules bound to or dissociated from the biosensor can generate response curves on the BLI system; unbound molecules, changes in the refractive index of the surrounding medium or changes in flow rate do not affect the interferogram pattern.
5. Collect and analyse data on the BLI's system.

Materials

• Equipment: Fortebio Bio-Layer Interferometry (BLI)
• Sample Type: DNA, RNA, Protein, Antibodies, Peptides, Small Molecules
• Optionals: Electrocompetent E.coli TG1 Cells
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