Unlock Exclusive Discounts & Flash Sales! Click Here to Join the Deals on Every Wednesday!

Analysis Interactions of RNA–Small Molecule by Microscale Thermophoresis (MST) (CAT#: STEM-MB-2430-LGZ)

Introduction

The study of RNA has grown tremendously in recent years. RNA has moved from being known as an intermediate in the central dogma of molecular biology to a molecule of enormous structural and functional diversity, implicated in every aspect of biology. With the rapid discovery of new functions, it is clear that RNA-targeting small molecule probes are needed to study RNA biology and elucidate the therapeutic potential based on RNA-small molecule interactions. While many techniques exist for measuring RNA-small molecule interactions, many of them have flaws that make them difficult to use routinely and are often not widely applicable. A new technique called Microscale Thermophoresis (MST), which measures the directional migration of molecules and/or molecular-ligand complexes along a temperature gradient, can be used to measure binding affinity using very small amounts of sample. The high sensitivity of the technique enables the measurement of affinity constants in the nanomolar and micromolar range.




Principle

One of the interacting molecules (mostly proteins) is labeled with fluorescent dye or combined with GFP label. The labeled protein and ligand molecules are placed in the capillary according to a specific concentration gradient. Infrared laser heating generates a microscopic temperature gradient field to undergo thermophoresis, with which the hydration layer, molecular size, electric charge and other molecular properties will change. Then the fluorescence distribution in the reaction system changes. In addition to accurately detecting interactions between biomolecules, MST can also obtain other parameters related to interactions between biomolecules by calculating dissociation constants (Ks), and achieve accurate qualitative analysis.

Applications

For characterizing thermodynamic parameters of biomolecular interactions.

Procedure

1. Sample processing.
2. MST detection.
3. Data analysis.

Materials

• Sample Type: protein 10uM/ 100ul or 50 micrograms, small molecules 100uM/200ul, protein peptides need to be sent at low temperature

Notes

In order to ensure the reliability of the test, some samples should be provided as much as possible.
Advertisement