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Analysis of AFF1 Gene Rearrangement by Southern Blot Technology (CAT#: STEM-MHT-0081-LGZ)

Introduction

Official Full Name: ALF transcription elongation factor 1
Also known as: AF4; FEL; PBM1; MLLT2
This gene encodes a member of the AF4/lymphonuclein protein family associated with the Fragile X chromosome E syndrome (FRAXE) protein family, which is associated with human childhood lymphocytic leukemia, fragile X intellectual disability, and ataxia. It is a prevalent mixed lineage leukemia fusion gene associated with idiopathic acute lymphoblastic leukemia. Members of this family have three conserved domains: the N-terminal homology domain, the AF4/lymphonucleoprotein domain, and the C-terminal homology domain. This protein regulates RNA polymerase II-mediated transcription through elongation and chromatin remodeling functions. Screened by RNA interference, this gene has been shown to promote the expression of CD133, a plasma membrane glycoprotein required for leukemia cell survival. Alternative splicing results in multiple transcript variants.




Principle

Under certain conditions, two single strands of nucleic acid with certain homology can be specifically hybridized to form double strands according to the principle of base complementarity. Generally, DNA molecules to be detected are digested with restriction enzymes, separated by agar-gel electrophoresis, denatured and transferred to nitrocellulocellulose film or nylon film or other solid phase support according to their position in the gel, fixed and then reacted with DNA probes labeled with isotopes or other markers. This is followed by autoradiography or an enzyme reaction to detect the amount of specific DNA molecules. If the object to be tested contains a sequence that is complementary to the probe, the two are combined by the principle of base complementarity, and the free probe is washed and detected by self-development or other suitable techniques, thus revealing the fragment to be tested and its relative size.

Applications

Gene Rearrangement Detection

Procedure

1. Sample Processing
2. DNA Extraction and Digestion
3. Gel Electrophoresis
4. Gel Pretreatment
5. Transfer membrane
6. Probe Labeling
7. Prehybridization (blocking)
8. Southern hybridization
9. Membrane washing
10. Autoradiographic Assay
11. Results Analysis

Materials

Sample: DNA, Bacterial Fluid/Tissue/Cell
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