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Analysis of FGFR1 Gene Rearrangement by Southern Blot Technology (CAT#: STEM-MHT-0011-LGZ)

Introduction

Official Full Name: fibroblast growth factor receptor 1
Also known as: CEK; FLG; HH2; OGD; ECCL; FLT2; KAL2; BFGFR; CD331; FGFBR; FLT-2; HBGFR; N-SAM; FGFR-1; HRTFDS; bFGF-R-1
The protein encoded by this gene is a member of the fibroblast growth factor receptor (FGFR) family, and its amino acid sequence is highly conserved among members and throughout evolution. FGFR family members differ from each other in ligand affinity and tissue distribution. The full-length representative protein includes an extracellular region consisting of three immunoglobulin-like domains, a hydrophobic membrane-spanning segment, and a cytoplasmic tyrosine kinase domain. The extracellular portion of this protein interacts with fibroblast growth factors, initiating a series of downstream signals that ultimately affect mitosis and differentiation. Members of this particular family bind acidic and basic fibroblast growth factors and are involved in limb induction. Mutations in this gene are associated with Pfeiffer syndrome, Jackson-Weiss syndrome, Antley-Bixler syndrome, osteohemoglobin dysplasia, and autosomal dominant Kallmann syndrome. Chromosomal aberrations involving this gene have been associated with stem cell myeloproliferative disorders and stem cell leukemia-lymphoma syndromes. Alternative splicing variants encoding different protein isoforms have been described; however, not all variants have been fully described.




Principle

Under certain conditions, two single strands of nucleic acid with certain homology can be specifically hybridized to form double strands according to the principle of base complementarity. Generally, DNA molecules to be detected are digested with restriction enzymes, separated by agar-gel electrophoresis, denatured and transferred to nitrocellulocellulose film or nylon film or other solid phase support according to their position in the gel, fixed and then reacted with DNA probes labeled with isotopes or other markers. This is followed by autoradiography or an enzyme reaction to detect the amount of specific DNA molecules. If the object to be tested contains a sequence that is complementary to the probe, the two are combined by the principle of base complementarity, and the free probe is washed and detected by self-development or other suitable techniques, thus revealing the fragment to be tested and its relative size.

Applications

Gene Rearrangement Detection

Procedure

1. Sample Processing
2. DNA Extraction and Digestion
3. Gel Electrophoresis
4. Gel Pretreatment
5. Transfer membrane
6. Probe Labeling
7. Prehybridization (blocking)
8. Southern hybridization
9. Membrane washing
10. Autoradiographic Assay
11. Results Analysis

Materials

Sample: DNA, Bacterial Fluid/Tissue/Cell
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