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Analysis of PTEN Gene Rearrangement by Southern Blot Technology (CAT#: STEM-MHT-0024-LGZ)

Introduction

Official Full Name: phosphatase and tensin homolog
Also known as: BZS; DEC; CWS1; GLM2; MHAM; TEP1; MMAC1; PTEN1; 10q23del; PTENbeta
This gene, identified as a tumor suppressor, is mutated at high frequency in a large number of cancers. The protein encoded by this gene is phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase. It contains a tensin-like domain and a catalytic domain similar to a dual-specificity protein tyrosine phosphatase. Unlike most tyrosine protein phosphatases, this protein preferentially dephosphorylates the phosphocarnosine substrate. It negatively regulates the level of intracellular phosphatidylinositol-3,4,5-triphosphate and exerts tumor suppressor effect by negatively regulating the AKT/PKB signaling pathway. Use of a non-canonical (CUG) upstream initiation site generates a longer isoform that initiates translation with leucine and is thought to be preferentially associated with the inner mitochondrial membrane. This longer isoform may help regulate mitochondrial energy metabolism. A pseudogene of this gene has been found on chromosome 9. Alternative splicing and the use of multiple translation initiation codons result in multiple transcript variants encoding different isoforms.




Principle

Under certain conditions, two single strands of nucleic acid with certain homology can be specifically hybridized to form double strands according to the principle of base complementarity. Generally, DNA molecules to be detected are digested with restriction enzymes, separated by agar-gel electrophoresis, denatured and transferred to nitrocellulocellulose film or nylon film or other solid phase support according to their position in the gel, fixed and then reacted with DNA probes labeled with isotopes or other markers. This is followed by autoradiography or an enzyme reaction to detect the amount of specific DNA molecules. If the object to be tested contains a sequence that is complementary to the probe, the two are combined by the principle of base complementarity, and the free probe is washed and detected by self-development or other suitable techniques, thus revealing the fragment to be tested and its relative size.

Applications

Gene Rearrangement Detection

Procedure

1. Sample Processing
2. DNA Extraction and Digestion
3. Gel Electrophoresis
4. Gel Pretreatment
5. Transfer membrane
6. Probe Labeling
7. Prehybridization (blocking)
8. Southern hybridization
9. Membrane washing
10. Autoradiographic Assay
11. Results Analysis

Materials

Sample: DNA, Bacterial Fluid/Tissue/Cell
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