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Hi-C Sequecing for 3D genome organization (CAT#: STEM-MB-0078-WXH)

Introduction

Hi-C (or standard Hi-C) is a high-throughput genomic and epigenomic technique to capture chromatin conformation. In general, Hi-C is considered as a derivative of a series of chromosome conformation capture technologies, including but not limited to 3C (chromosome conformation capture), 4C (chromosome conformation capture-on-chip/circular chromosome conformation capture), and 5C (chromosome conformation capture carbon copy). Hi-C comprehensively detects genome-wide chromatin interactions in the cell nucleus by combining 3C and next-generation sequencing (NGS) approaches and has been considered as a qualitative leap in C-technology (chromosome conformation capture-based technologies) development and the beginning of 3D genomics.
Similar to the classic 3C technique, Hi-C measures the frequency (as an average over a cell population) at which two DNA fragments physically associate in 3D space, linking chromosomal structure directly to the genomic sequence.




Applications

• Haplotype map construction for chromosome spans
• Exploring the 3D structure of the genome
• Develop DNA elements that regulate genes
• Hi-C assisted genome assembly

Procedure

1.Crosslink DNA
2.Cut with restriction enzyme
3.Fill ends and mark with biotin
4.Ligate
5.Purfy and shear DNA; pull down biotin
6.Sequece using paired-ends

Notes

Customer provides tissue or cell samples.

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