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Microsatellite markers are polymorphic DNA loci containing repeated nucleotide sequences, typically 2 to 7 nucleotides per repeat unit. The length of the repeat is the same for the majority of the repeats within an individual microsatellite locus, but the number of repeats for a specific locus may differ, resulting in alleles of varying length that can be subjected to fragment analysis by capillary electrophoresis. Because they are inherited in Mendelian fashion, analysis of length variations is widely accepted for applications such as microsatellite instability (MSI).
DNA fragment analysis enables a multitude of applications from genotyping to bacteria identification and from plant screening to gene expression profiling.