Unlock Exclusive Discounts & Flash Sales! Click Here to Join the Deals on Every Wednesday!

Ribosome-profiling (Ribo-Seq) (CAT#: STEM-MB-0077-WXH)

Introduction

Ribosome-profiling techniques were developed in response to the importance of measuring gene expression at the translational level. Ribosome profiling is a direct technique for determining the precise mRNA region read by the ribosome and for directly examining the transcripts associated with the translation machinery. In comparison to conventional RNA-Seq studies, ribosome profiling is created to assess mRNA included in inactive translation.
The reality that translating ribosomes can protect about 30 nucleotides of an mRNA fragment from RNAse digestion allows for ribosome profiling. The nuclease is used to destroy unprotected regions of in vitro translated mRNAs. The ribosome-protected mRNAs can be plotted back to the initial mRNA to assess the precise location of the translating ribosome.




Applications

• Categorizing translated mRNA areas
• Observing how nascent peptides are folded
• Measuring the volume of specific proteins synthesized
• Defining translated sequences within the complex transcriptome
• Mapping translation initiation areas
• Measuring differential gene expression at the level of mRNA translation
• Identifying novel protein-coding genes and ribosome pausing
• Providing data for quantitative RNA sequencing.

Procedure

1. Isolate the mRNA molecules bound to ribosomes by lysing the cells or tissue.
2. Make complexes immobile.
3. Digest the RNA that isn’t protected by ribosomes with ribonucleases.
4. Isolate the mRNA-ribosome complexes.
5. Purification of the mixture to eliminate proteins.
6. Size-select for mRNA fragments that have been previously protected.
7. Ligate 3′ fragment adapter
8. Reverse transcriptase is used to convert RNA to cDNA.
9. Amplify in a strand-by-strand fashion.
10. Reads from a sequence.
11. determine the translational profile, align the sequence results to the genomic sequence.

Other recommended products

Advertisement