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Vectorette PCR (CAT#: STEM-MB-0222-WXH)

Introduction

Vectorette polymerase chain reaction (PCR) is a method designed to amplify DNA when the sequence of one end of the target DNA is unknown. The source DNA is cleaved by a restriction endonuclease that leaves an overhang, by which the fragments are ligated to a compatible universal synthetic oligonucleotide duplex called a vectorette. The vectorette is engineered with a central mismatched sequence, and the vectorette primer is identical to the sequence on the vectorette strand that becomes ligated to that fragment strand which can bind a second primer that is complementary to the known internal sequence of the fragment. The binding site for the vectorette primer is created only when the internal primer is extended to the end of the vectorette. This avoids duplication of the vectorettes attached to all other restriction fragments.




Applications

• Analysis of sequences by subvectoretting when PCR products of a large size are the subject at hand.
• Facilitating the recovery and mapping of sequences in complex genomes.
• Amplification of sequences which were previously uncharacterized.
• Accomplishing genomic walking.
• Identify genomic positions of insertion sequences (IS) and map them.
• Isolation of microsatellite repeats.

Procedure

General procedure:
1. Denaturation
2. Annealing
3. Extension
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