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Analysis Biomolecular Interactions of GR200 Aptamer with EGFR Protein by BLI (CAT#: STEM-MB-0168-CJ)

Introduction

EGFR is a transmembrane protein that is overexpressed in many types of cells with high proliferation activity, in particular, in aggressive cancers such as nonsmall-cell lung cancer and glioma. The binding of wild-type EGFR with epidermal growth factor (EGF) leads to autophosphorylation of the intracellular domain of EGFR and launches the phosphokinase cascade. Phosphokinases activate several transcription factors and provoke alterations in gene expression; cell proliferation is highly increased and upregulated. A large number of mutations within the EGFR gene have been annotated. One of the protein variants, EGFRvIII, has a deletion of 267 amino acids in the extracellular domain of EGFR; EGFRvIII is permanently activated without EGF binding, which results in high uncontrolled cell proliferation.




Principle

Bio-Layer Interferometry (BLI) is an optical technique for measuring macromolecular interactions by analyzing interference patterns of white light reflected from the surface of a biosensor tip. BLI experiments are used to determine the kinetics and affinity of molecular interactions. In a BLI experiment, one molecule is immobilized to a Dip and Read Biosensor and binding to a second molecule is measured. A change in the number of molecules bound to the end of the biosensor tip causes a shift in the interference pattern that is measured in real-time.

Applications

Oncology & Cancer; Immunology/Inflammation

Procedure

1. Detect Buffers and prepare samples. BLI experiments are set up with one molecule immobilised on the surface of the biosensor (load sample) and a second molecule in solution (the analytical sample).
2. Fix the load sample on the biocompatible biosensor while the analytical sample is in solution.
3. The biosensor tip is immersed in the solution so that the target molecule begins to bind to the analysis sample.
4. Set up and run the BLI experiment. Molecules bound to or dissociated from the biosensor can generate response curves on the BLI system; unbound molecules, changes in the refractive index of the surrounding medium or changes in flow rate do not affect the interferogram pattern.
5. Collect and analyse data on the BLI's system.

Materials

• Equipment: Fortebio Bio-Layer Interferometry (BLI)
• Sample Type: DNA, RNA, Protein, Antibodies, Peptides, Small Molecules
• Optionals: Standard phosphoramidites, MerMade column reactors
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