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Analysis of Tus-Ter protein-DNA complexes by Differential Scanning Fluorimetry(DSF) (CAT#: STEM-MB-0778-WXH)

Introduction

Tus is a relatively well characterized protein that binds specifically to 21 bp DNA sequences, called Ter, scattered around the circular chromosome of E. coli to coordinate the termination of DNA replication opposite to oriC. The Tus–Ter complex can only arrest a replisome approaching towards its non-permissive face through the formation of a Tus–Ter-lock (TT-lock), whose action is to tighten the complex, avoiding dissociation of Tus. When the replisome approaches the permissive face of the complex, Tus rapidly dissociates from Ter. The TT-lock is formed when the C·G(6) base pair is broken during DNA unwinding at the non-permissive face of the complex. The unpaired C(6) can then bind into a cytosine-binding pocket at the surface of Tus.




Principle

Differential Scanning Fluorimetry measures protein thermal unfolding by monitoring changes in fluorescence emission of a sample upon heating. This allows the determination of protein thermostability and complex formation even with weakly binding ligands by thermal shift assay. Differential Scanning Fluorimetry is therefore ideally suited for screening of optimum buffer conditions like pH, buffer composition and ionic strength. The technique is applicable to any biological sample, from soluble proteins to integral membrane proteins.

Applications

To identify low-molecular-weight ligands that bind and stabilize purified proteins.
To measure the denaturation and unfolding of proteins.

Procedure

1. Preparation of compound solutions
2. Preparation of buffer/additive screen plates
3. Preparation of compound storage plates
4. Equipment preparation
5. Sample preparation
32. Performing the scan

Materials

Real-time PCR instrument
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