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Analysis Biomolecular Interactions of Vaccinia Virus (VACV) A27 Protein with Monoclonal Antibody by BLI (CAT#: STEM-MB-0124-CJ)

Introduction

Orthopoxviruses are a genus of DNA viruses of which four species are known to cause disease in humans: vaccinia virus (VACV), cowpox virus (CPXV), variola virus (VARV), and monkeypox virus (MPXV).
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VACV A27 is a 110 amino acid protein that consists of a signal peptide, an attachment domain or heparin binding site, a fusion domain, a coiled-coil domain. Structural studies indicate that in the monomer the N-terminal amino acids form a random and fairly flexible coil that is followed by a rigid α-helical region. The native protein exists as a hexamer and the α-helical region forms a coiled-coil in the self-assembling oligomerization region. Even though the heparin binding site (HBS) is found at the N-terminus, the oligomeric structure is required for heparin binding. The “KKPE” sequence within the HBS has been shown to be required for binding to heparin and this binding is sequence specific rather than a charge requirement.




Principle

Bio-Layer Interferometry (BLI) is an optical technique for measuring macromolecular interactions by analyzing interference patterns of white light reflected from the surface of a biosensor tip. BLI experiments are used to determine the kinetics and affinity of molecular interactions. In a BLI experiment, one molecule is immobilized to a Dip and Read Biosensor and binding to a second molecule is measured. A change in the number of molecules bound to the end of the biosensor tip causes a shift in the interference pattern that is measured in real-time.

Applications

Immunology/Inflammation; Virology

Procedure

1. Detect Buffers and prepare samples. BLI experiments are set up with one molecule immobilised on the surface of the biosensor (load sample) and a second molecule in solution (the analytical sample).
2. Fix the load sample on the biocompatible biosensor while the analytical sample is in solution.
3. The biosensor tip is immersed in the solution so that the target molecule begins to bind to the analysis sample.
4. Set up and run the BLI experiment. Molecules bound to or dissociated from the biosensor can generate response curves on the BLI system; unbound molecules, changes in the refractive index of the surrounding medium or changes in flow rate do not affect the interferogram pattern.
5. Collect and analyse data on the BLI's system.

Materials

• Equipment: Fortebio Bio-Layer Interferometry (BLI)
• Sample Type: DNA, RNA, Protein, Antibodies, Peptides, Small Molecules
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