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Analysis of IGH Gene Rearrangement by Southern Blot Technology (CAT#: STEM-MHT-0033-LGZ)

Introduction

Official Full Name: immunoglobulin heavy locus
Also known as: IGD1; IGH@; IGHJ; IGHV; IGHD@; IGHJ@; IGHV@; IGH.1@; IGHDY1
Immunoglobulins recognize foreign antigens and initiate immune responses such as phagocytosis and the complement system. Each immunoglobulin molecule consists of two identical heavy chains and two identical light chains. This region represents the germline organization of the heavy chain locus. The locus includes V (variable), D (diversity), J (joining), and C (constant) segments. During B-cell development, recombination events at the DNA level join a single D segment with a J segment; this partially rearranged D–J gene then joins the V segment. The rearranged V-D-J is subsequently transcribed in the IGHM constant region; this transcript encodes a heavy chain. Later in development, B cells produce V-D-J-Cmu-Cdelta pre-messenger RNA that can be alternatively spliced to encode the mu or delta heavy chain. Mature B cells in lymph nodes undergo on-off recombination so that the V-D-J genes are adjacent to one of the IGHG, IGHA, or IGHE genes, and each cell expresses a gamma, alpha, or epsilon heavy chain. Recombination of many different V segments with a few J segments provides broad antigen recognition. Additional diversity is achieved by random addition of nucleotides by terminal deoxynucleotidyl transferase and by somatic hypermutation that occurs during spleen and lymph node B-cell maturation. Due to the existence of polymorphisms, there are differences in the number of functions of V, J, and D genes among individuals, and some V, D, J, and C segments may be pseudogenes.




Principle

Under certain conditions, two single strands of nucleic acid with certain homology can be specifically hybridized to form double strands according to the principle of base complementarity. Generally, DNA molecules to be detected are digested with restriction enzymes, separated by agar-gel electrophoresis, denatured and transferred to nitrocellulocellulose film or nylon film or other solid phase support according to their position in the gel, fixed and then reacted with DNA probes labeled with isotopes or other markers. This is followed by autoradiography or an enzyme reaction to detect the amount of specific DNA molecules. If the object to be tested contains a sequence that is complementary to the probe, the two are combined by the principle of base complementarity, and the free probe is washed and detected by self-development or other suitable techniques, thus revealing the fragment to be tested and its relative size.

Applications

Gene Rearrangement Detection

Procedure

1. Sample Processing
2. DNA Extraction and Digestion
3. Gel Electrophoresis
4. Gel Pretreatment
5. Transfer membrane
6. Probe Labeling
7. Prehybridization (blocking)
8. Southern hybridization
9. Membrane washing
10. Autoradiographic Assay
11. Results Analysis

Materials

Sample: DNA, Bacterial Fluid/Tissue/Cell
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