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Determination of diffusion coefficients in live cells by Fluorescence recovery after photobleaching (FRAP) (CAT#: STEM-MT-0041-WXH)

Introduction

Movement of molecules in and out of cellular compartments or structures is a basic physical phenomenon that is important for many biological processes including transcription, molecular transport, signal transduction, and accumulation of molecules. The diffusion coefficient (also termed diffusivity) is a quantitative measure of a molecule's movement in and out of a cell as well as in solution. The diffusion coefficient is a constant expressing the relationship between flux due to molecular diffusion and the concentration gradient of the molecule of interest.




Principle

Fluorescence recovery after photobleaching (FRAP) is a microscopy technique capable of quantifying the mobility of molecules within cells. By exploiting the phenomenon of photobleaching, fluorescent mole- cules within a region of interest can be selectively and irreversibly 'turned off'. It is capable of quantifying the two-dimensional lateral diffusion of a molecularly thin film containing fluorescently labeled probes, or to examine single cells.

Applications

• Characterization of the mobility of individual lipid molecules within a cell membrane.
• Analysis of molecule diffusion within the cell
• Study of protein interaction partners, organelle continuity and protein trafficking.

Procedure

1. An initial fluorescence of fluorescent molecules is measured in the region of interest (ROI).
2. The fluorescent molecules are rapidly photobleached by focusing the high-intensity laser beam onto the defined area.
3. The exchange of bleached molecules with unbleached molecules from the surrounding region is followed over time using a low-intensity laser.

Materials

• Optical microscope.
• Light source.
• Fluorescent probe.
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