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Volatile fatty acids (VFAs) are central intermediates of anaerobic metabolism and present in aquatic environments such as marine sediments. Conceptually, the isotopic composition of volatile fatty acids is presumed to be sensitive to the specific biogeochemical processes involved in their production and consumption. However, due to generally low environmental concentrations, our knowledge on isotopic variability of VFAs is limited. We report the development and application of a new protocol for compound-specific carbon isotopic analysis of VFAs in marine porewaters and other aqueous liquids. The service uses liquid chromatography-isotope ratio mass spectrometry for isotopic analysis of volatile fatty acids in sediment/pore water systems.