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Analysis Biomolecular Interactions of Antibodies to SARS-CoV-2 Spike N-Terminal Domain (NTD) by BLI (CAT#: STEM-MB-0085-CJ)

Introduction

Despite the SARS-CoV-2 onset of mass vaccination campaigns, the pandemic exhibits unprecedented extent of morbidity and mortality. Consequently, there is still an urgent need for effective therapeutics. The virus spike (S) glycoprotein, essential for the recognition of its human cognate angiotensin-converting enzyme 2 (hACE2) receptor on target cells and subsequent viral internalization, was implicated as the main target for coronavirus-neutralizing monoclonal antibodies (mAbs). Processing of the S protein by host proteases results in the generation of the S1 subunit, responsible for receptor engagement, and the S2 subunit, which mediates membrane fusion. Two functional domains can be distinguished within the S1 subunit: the N-terminal domain (NTD) and the C-terminal domain (CTD). The NTD of SARS-CoV-2 is important for SARS-CoV-2 infectivity.

The spike NTD may represents an important element involved in SARS-CoV-2 infectivity, and therefore, a possible additional target for neutralizing antibodies. The recent emergence of escape variants further encouraged consideration of neutralizing mAbs against NTD as a therapeutic strategy, possibly in combination with anti-RBD
mAbs.




Principle

Bio-Layer Interferometry (BLI) is an optical technique for measuring macromolecular interactions by analyzing interference patterns of white light reflected from the surface of a biosensor tip. BLI experiments are used to determine the kinetics and affinity of molecular interactions. In a BLI experiment, one molecule is immobilized to a Dip and Read Biosensor and binding to a second molecule is measured. A change in the number of molecules bound to the end of the biosensor tip causes a shift in the interference pattern that is measured in real-time.

Applications

Immunology/Inflammation; Pharmacology; Virology

Procedure

1. Detect Buffers and prepare samples. BLI experiments are set up with one molecule immobilised on the surface of the biosensor (load sample) and a second molecule in solution (the analytical sample).
2. Fix the load sample on the biocompatible biosensor while the analytical sample is in solution.
3. The biosensor tip is immersed in the solution so that the target molecule begins to bind to the analysis sample.
4. Set up and run the BLI experiment. Molecules bound to or dissociated from the biosensor can generate response curves on the BLI system; unbound molecules, changes in the refractive index of the surrounding medium or changes in flow rate do not affect the interferogram pattern.
5. Collect and analyse data on the BLI's system.

Materials

• Equipment: Gator® Bio-Layer Interferometry (BLI)
• Sample Type: DNA, RNA, Protein, Antibodies, Peptides, Small Molecules
• Optionals: Virus Strains, Bacterial Strains
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