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Microscale Thermophoresis (MST) is a technique for the quantitative analysis of interactions between biomolecules with low sample consumption. MST utilizes the local temperature field to measure the diffusion rates of the free and bound states of the fluorescently labeled protein, and determines the dissociation constant, KD, by fitting the binding isotherm with a 1:1 binding model. MST can be used to quantitative analysis of the interaction of the N-terminal his-tagged 6-methyladenine (m6A) reader protein YTHDF2 with m6A modified and unmodified RNA, in single-strand configuration or with RNA:DNA hybrid substrates.