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Overlap extension PCR (OE-PCR) (CAT#: STEM-MB-0215-WXH)

Introduction

This method is also called “Splicing by Overlap Extension” or SOEing. Overlap extension PCR is a valuable technique that is commonly used for cloning large complex fragments, making edits to cloned genes or fusing two gene elements together. It creates long DNA fragments from shorter ones. It is used to insert specific mutation at specific points in a sequence or to splice smaller DNA fragments into a larger polynucleotide.




Principle

Initial PCRs generate overlapping gene segments that are then used as template DNA for another PCR to create a full-length product. Internal primers generate overlapping, complementary 3′ ends on the intermediate segments and introduce nucleotide substitutions, insertions or deletions for site-directed mutagenesis, or for gene splicing, encode the nucleotides found at the junction of adjoining gene segments. Overlapping strands of these intermediate products hybridize at this 3′ region in a subsequent PCR and are extended to generate the full-length product amplified by flanking primers that can include restriction enzyme sites for inserting the product into an expression vector for cloning purposes.

Applications

• Efficient gene cloning and multiple site-directed large fragments insertion, deletion and replacement.
• Site-directed mutagenesis.
• The creation of chimeric molecules .
• Cloning of large gene segments by splicing together smaller pieces.
• Create recombinant plasmids.

Procedure

1.Primer design
2."Extension PCR": PCR amplify the necessary fragments separately
3.Clean up the product using a DNA column.
4."Overlap PCR": Use cleaned up fragments as template in a PCR reaction
5."Purification PCR": Add end primers to the Overlap PCR reaction
6.Gel extract the correct size fragment.