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In this service, one important branch of high-speed capillary electrophoresis (HSCE), short-end CE, is employed for the highly efficient analysis of Porphyromonas gingivalis (Pg), Treponema denticola (Td), and Tannerella forsythia (Tf), which are closely related to the occurrence of periodontal disease. The short-end CE strategy features favorable properties for reproducibility, accuracy and linearity, whose evaluation includes the values of relative standard deviation and the correlation coefficient. The service may provide an effective avenue for the clinical detection of periodontal disease.