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Study of BCR/ABL Rearrangements in Chronic Myeloid Leukaemia (CML) by Fluorescence in situ hybridisation (FISH) (CAT#: STEM-MB-1208-WXH)

Introduction

Chronic myeloid leukaemia (CML) is a clonal myeloproliferative disorder of the haematopoietic stem cells. About 90% to 95% are characterised cytogenetically by the presence of the Philadelphia (Ph) chromosome, due to a translocation between chromosomes 9 and 22. This rearrangement results in the formation of a chimeric BCR/ ABL fusion gene on the derivative chromosome 22. The fusion gene is transcribed and spliced into a 8.5 kb chimeric messenger RNA with b2a2 and b3a2 configurations. The translation product is a 210 kD BCR/ABL protein that contributes to CML pathogenesis.




Principle

FISH uses fluorescent probes with complementary base sequences to locate the presence or absence of specific portions of DNA on chromosomes. The probe and target DNA must be denatured with heat or chemicals to break hydrogen bonds in the DNA and to allow hybridisation to occur once the two samples are mixed. The fluorescent probes form new hydrogen bonds with their complementary base pairs on the DNA, and these can then be detected via microscopy.

Applications

Detect and localize the presence or absence of specific DNA sequences on chromosomes.
Detect and localize specific RNA targets (mRNA, lncRNA and miRNA) in cells, circulating tumor cells, and tissue samples.

Procedure

1. Sample preparation
2. Co-denaturation and hybridization
3. Probe detection
4. Wash off of unbound probe
5. Analysis by flow cytometer/fluorescence microscopy

Materials

• Flow cytometer
• Fluorescence microscopy
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