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Analysis Biomolecular Interactions of NtAGO2 for KRAS by BLI (CAT#: STEM-MB-0195-CJ)

Introduction

Mutations in the RAS gene family account for a large percentage of all known genetic aberrations in cancer. Of the three RAS homologues, KRAS is the most frequently mutated, driving the three most lethal cancer types in the United States: pancreatic ductal adenocarcinoma (PDAC), colorectal cancer, and lung adenocarcinoma. KRAS is a small GTPase that relays mitogenic signals from growth factor receptors at the membrane to the nucleus when bound to GTP. Under physiological conditions, nucleotide cycling on KRAS is accelerated and regulated by guanine exchange factors (GEFs) and GTPase activating proteins (GAPs), which promote GTP loading and hydrolysis, respectively. The KRAS structure is compact, comprised only of a G-domain (residues 1–166) and a hypervariable C-terminal region (residues 167–188) that is important for membrane association.

AGO2 is a large and dynamic protein with four distinct domains connected through linker regions. It performs the final step in miRNA maturation, associates with other proteins to form the RISC complex, and cleaves the miRNA:mRNA duplex. These functions are regulated in a context-specific way through a variety of post-translational modifications. Although AGO2 is independently associated with oncogenesis, it was demonstrated that AGO2 expression was necessary for oncogenic transformation in mutant KRAS-dependent cell lines. The interaction between AGO2 and wild-type KRAS was disrupted following the phosphorylation of AGO2 by the epidermal growth factor receptor (EGFR), allowing KRAS association with activating GEFs such as SOS.




Principle

Bio-Layer Interferometry (BLI) is an optical technique for measuring macromolecular interactions by analyzing interference patterns of white light reflected from the surface of a biosensor tip. BLI experiments are used to determine the kinetics and affinity of molecular interactions. In a BLI experiment, one molecule is immobilized to a Dip and Read Biosensor and binding to a second molecule is measured. A change in the number of molecules bound to the end of the biosensor tip causes a shift in the interference pattern that is measured in real-time.

Applications

Oncology & Cancer; Immunology/Inflammation; Pharmacology

Procedure

1. Detect Buffers and prepare samples. BLI experiments are set up with one molecule immobilised on the surface of the biosensor (load sample) and a second molecule in solution (the analytical sample).
2. Fix the load sample on the biocompatible biosensor while the analytical sample is in solution.
3. The biosensor tip is immersed in the solution so that the target molecule begins to bind to the analysis sample.
4. Set up and run the BLI experiment. Molecules bound to or dissociated from the biosensor can generate response curves on the BLI system; unbound molecules, changes in the refractive index of the surrounding medium or changes in flow rate do not affect the interferogram pattern.
5. Collect and analyse data on the BLI's system.

Materials

• Equipment: Fortebio Bio-Layer Interferometry (BLI)
• Sample Type: DNA, RNA, Protein, Antibodies, Peptides, Small Molecules
• Optionals: E. coli Rosetta (DE3) pLysS cells
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