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Label-free quantification is a method in mass spectrometry that aims to determine the relative amount of proteins in two or more biological samples. Unlike other methods for protein quantification, label-free quantification does not use a stable isotope containing compound to chemically bind to and thus label the protein.
In principle, the label-free approach is based on peptide mass spectral peak intensity profiling.
A major advantage of label-free technology is that it allows the ligand to retain its native conformation and biological activity.